STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu3956UPF0441 protein plu3956; Unnamed protein product; Highly similar to unknown protein YgiB of Escherichia coli; Belongs to the UPF0441 family. (234 aa)    
Predicted Functional Partners:
plu3957
GSP_synth domain-containing protein; Unnamed protein product; Highly similar to putative synthetase/amidase YgiC of Escherichia coli.
 
  
 0.797
plu4309
GSP_synth domain-containing protein; Unnamed protein product; Similar to unknown protein.
 
  
 0.794
plu4312
Unnamed protein product; Similar to unknown protein.
 
    0.732
plu0305
GAPES3 domain-containing protein; Unnamed protein product; Similar to putative membrane protein YhjK of Escherichia coli.
  
     0.707
nlpB
Lipoprotein-34 precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.707
plu2029
Unnamed protein product; Similar to unknown protein YecF of Escherichia coli.
  
     0.706
plu3186
Unnamed protein product; Highly similar to unknown protein YfcL of Escherichia coli.
  
     0.705
plu4314
Unnamed protein product; Some similarities with unknown protein.
 
     0.694
plu4311
Unnamed protein product; Similar to unknown protein.
 
    0.693
plu4771
Unnamed protein product; Similar to unknown protein YiiQ precursor of Escherichia coli.
  
     0.681
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.