Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3988Unnamed protein product; Similar to unknown protein YbjX of Escherichia coli. (311 aa)    
Predicted Functional Partners:
ampE
Signaling protein AmpE; Some high similarities with unknown protein of Photorhabdus.
  
     0.607
plu2724
UPF0370 protein plu2724; Unnamed protein product; Highly similar to putative membrane protein.
  
     0.561
plu2872
Unnamed protein product; Highly similar unknown protein YejM of Escherichia coli.
  
     0.498
matP
Macrodomain Ter protein; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain.
  
     0.452
plu2488
UPF0263 protein plu2488; Unnamed protein product; Highly similar to unknown protein YciU of Escherichia coli; Belongs to the UPF0263 family.
  
     0.436
fhuF
Ferric iron reductase protein FhuF.
  
     0.423
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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