Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu3994Unnamed protein product; Similar to putative membrane protein YqjD of Escherichia coli. (101 aa)    
Predicted Functional Partners:
plu3995
Unnamed protein product; Similar to unknown protein YqjE of Escherichia coli.
 
  
 0.985
plu3996
Unnamed protein product; Similar to unknown protein YqjK of Escherichia coli.
  
  
 0.827
osmY
Osmotically inducible protein Y precursor.
 
    0.781
wrbA
NAD(P)H dehydrogenase (quinone); Weakly similar to transposase.
   
    0.688
fbaB
Fructose-biphosphate aldolase class I (FBP aldolase).
   
  
 0.682
plu2481
OMP_b-brl domain-containing protein; Unnamed protein product; Similar to Ail protein precursor of Yersinia (OmpX).
  
     0.603
plu2480
OMP_b-brl domain-containing protein; Unnamed protein product; Similar to Ail protein precursor of Yersinia (OmpX).
  
     0.591
plu2029
Unnamed protein product; Similar to unknown protein YecF of Escherichia coli.
  
     0.585
dkgB
2,5-diketo-D-gluconic acid reductase B (2,5-DKG reductase B) (2,5-DKGR B) (25DKGR-B) (AKR5D).
   
    0.567
dkgA
2,5-diketo-D-gluconic acid reductase A (2,5-DKG reductase A) (2,5-DKGR A) (25DKGR-A) (AKR5C).
   
    0.567
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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