Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4002Unnamed protein product; Similar to putative glycosylase YraM of Escherichia coli. (597 aa)    
Predicted Functional Partners:
mrcA
Penicillin-binding protein 1A (PBP-1a) (PBP1a) (penicillin-binding protein A) [Includes: Penicillin-insensitive transglycosylase (Peptidoglycan TGase); Penicillin-sensitive transpeptidase (DD-transpeptidase)].
  
 
 
 0.839
plu2087
Unnamed protein product; Similar to putative oxidoreductase component YcdY of Escherichia coli.
  
     0.746
plu4106
Unnamed protein product; Similar to unknown protein YhhL of Escherichia coli.
  
     0.738
plu2693
UPF0181 protein plu2693; Unnamed protein product; Highly similar to unknown protein YoaH of Escherichia coli; Belongs to the UPF0181 family.
  
     0.736
plu1173
Unnamed protein product; Highly similar to unknown protein YggN of Escherichia coli.
  
     0.732
plu4003
UPF0102 protein plu4003; Unnamed protein product; Similar to unknown protein YraN of Escherichia coli; Belongs to the UPF0102 family.
  
  
 0.722
matP
Macrodomain Ter protein; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain.
  
     0.718
plu2677
Unnamed protein product; Similar to probable membrane protein YniB of Escherichia coli.
  
     0.715
plu4005
Unnamed protein product; Similar to unknown protein YraP precursor of Escherichia coli.
  
    0.695
rsmI
Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.691
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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