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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
arcBAerobic respiration control sensor protein. (781 aa)    
Predicted Functional Partners:
bvgS
Virulence sensor protein BvgS precursor.
 
 
0.999
arcA
Two-component system, OmpR family, aerobic respiration control protein ArcA; Negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA) (dye resistance protein).
 
 0.998
barA
Sensor protein BarA.
 
 
0.998
rcsC
Sensor protein (capsular synthesis regulator component C); Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.
 
 
0.996
rcsD
Phosphotransferase RcsD; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB.
 
 
 0.992
plu1233
Unnamed protein product; Similar to C-terminal region of formate hydrogenlyase transcriptional activator.
  
 
 0.981
cpxR
Two-component response regulator.
 
 
 0.976
ompR
Two-component response regulator.
 
 
 0.974
phoB
Phosphate regulon transcriptional regulatory protein.
 
 
 0.971
phoP
Two-component response regulator PhoP.
 
 
 0.969
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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