STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu4026Unnamed protein product; Hypothetical gene. (162 aa)    
Predicted Functional Partners:
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.
  
  
 0.702
tyrA
T-protein [includes: chorismate mutase (CM); prephenate dehydrogenase (PDH)].
  
  
 0.648
pheA
P-protein [includes: chorismate mutase (CM); prephenate dehydratase (PDT)].
  
  
 0.546
plu4027
Unnamed protein product; Similar to 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component HpaB.
       0.535
trpC
Tryptophan biosynthesis protein TrpCF [includes: indole-3-glycerol phosphate synthase (IGPS); N-(5'-phospho-ribosyl)anthrnilate isomerase (PRAI)].
     
 0.478
plu4024
Unnamed protein product; Some weak similarities with unknown protein.
       0.471
plu4025
Unnamed protein product; Some similarities with the central region of DNA-directed RNA polymerase.
       0.471
plu3563
Glutamine amidotransferase type-1 domain-containing protein; Unnamed protein product; Similar to p-aminobenzoic acid synthase.
     
 0.423
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.