Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
plu4027Unnamed protein product; Similar to 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component HpaB. (519 aa)    
Predicted Functional Partners:
hpcB
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
 
 0.927
feaB
Phenylacetaldehyde dehydrogenase (PAD).
    
 0.901
hpaC
4-hydroxyphenylacetic acid hydroxylase.
 
  
 0.692
plu4026
Unnamed protein product; Hypothetical gene.
       0.535
hpcG
2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
 
  
 0.455
hpcD
5-carboxymethyl-2-hydroxy-muconic acid isomerase.
 
  
 0.446
plu2201
FAA_hydrolase domain-containing protein; Unnamed protein product; Similar to 2-oxopent-4-dienoate hydratase.
 
  
 0.434
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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