Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4029Unnamed protein product; Highly similar to unknown protein YrbA of Escherichia coli; Belongs to the BolA/IbaG family. (84 aa)    
Predicted Functional Partners:
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
  
 0.786
plu2604
Glutaredoxin; Unnamed protein product; Highly similar to probable glutaredoxin-like protein YdhD of Escherichia coli; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 
 
 0.664
plu4032
MlaD domain-containing protein; Unnamed protein product; Highly similar to YrbD precursor protein of Escherichia coli.
     
 0.599
plu4034
Unnamed protein product; Highly similar to ABC transporter, ATP-binding protein YrbF of Escherichia coli.
     
 0.578
plu4030
STAS domain-containing protein; Unnamed protein product; Similar to unknown protein YrbB of Escherichia coli.
       0.569
plu4031
Unnamed protein product; Highly similar to YrbC precursor protein of Escherichia coli.
       0.569
plu4036
Arabinose 5-phosphate isomerase; Unnamed protein product; Highly similar to putative isomerase YrbH of Escherichia coli.
  
    0.550
lptC
Lipopolysaccharide export system protein LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
 
     0.543
plu4033
Unnamed protein product; Highly similar to ABC transporter, permease protein YrbE of Escherichia coli.
       0.542
rpsU
30S ribosomal subunit protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
    0.486
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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