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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu4032MlaD domain-containing protein; Unnamed protein product; Highly similar to YrbD precursor protein of Escherichia coli. (168 aa)    
Predicted Functional Partners:
plu4033
Unnamed protein product; Highly similar to ABC transporter, permease protein YrbE of Escherichia coli.
 
 0.998
plu4034
Unnamed protein product; Highly similar to ABC transporter, ATP-binding protein YrbF of Escherichia coli.
 
 0.998
plu4031
Unnamed protein product; Highly similar to YrbC precursor protein of Escherichia coli.
 
 0.994
plu4030
STAS domain-containing protein; Unnamed protein product; Similar to unknown protein YrbB of Escherichia coli.
  
 0.966
vacJ
VacJ lipoprotein precursor.
 
   
 0.809
motB
Chemotaxis protein.
 
 
   0.646
plu4036
Arabinose 5-phosphate isomerase; Unnamed protein product; Highly similar to putative isomerase YrbH of Escherichia coli.
       0.575
plu4035
Unnamed protein product; Similar to putative Cation Antiporter (CaCA) Family protein YrbG of Escherichia coli.
       0.544
plu4037
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
  
    0.539
lptA
Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.
  
  
 0.531
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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