STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu4034Unnamed protein product; Highly similar to ABC transporter, ATP-binding protein YrbF of Escherichia coli. (267 aa)    
Predicted Functional Partners:
plu4033
Unnamed protein product; Highly similar to ABC transporter, permease protein YrbE of Escherichia coli.
 
 0.999
plu4032
MlaD domain-containing protein; Unnamed protein product; Highly similar to YrbD precursor protein of Escherichia coli.
 
 0.998
plu4031
Unnamed protein product; Highly similar to YrbC precursor protein of Escherichia coli.
 
 
 0.969
plu4030
STAS domain-containing protein; Unnamed protein product; Similar to unknown protein YrbB of Escherichia coli.
  
 0.966
oppD
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
     
0.690
dppD
Dipeptide transport ATP-binding protein dppD; Belongs to the ABC transporter superfamily.
 
     
0.582
plu4036
Arabinose 5-phosphate isomerase; Unnamed protein product; Highly similar to putative isomerase YrbH of Escherichia coli.
       0.575
plu4035
Unnamed protein product; Similar to putative Cation Antiporter (CaCA) Family protein YrbG of Escherichia coli.
       0.544
yhbG
Probable ABC transporter ATP-binding protein yhbG.
 
   
0.544
lptC
Lipopolysaccharide export system protein LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
     
 0.539
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.