STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4065Unnamed protein product; Similar to carbon-nitrogen hydrolase. (285 aa)    
Predicted Functional Partners:
tldD
TldD protein, suppresses the inhibitory activity of the carbon storage regulator (CSRA).
  
    0.858
plu4066
Unnamed protein product; Similar to unknown protein YhdP of Escherichia coli.
       0.854
plu4068
dTTP/UTP pyrophosphatase; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.739
plu4062
Barstar domain-containing protein; Unnamed protein product; Similar to ribonuclease inhibitor (barstar).
       0.679
cafA
Ribonuclease G (RNase G) (cytoplasmic axial filament protein).
       0.668
plu4063
Ribonuclease; Unnamed protein product; Similar to ribonuclease precursor (Barnase) (RNase Ba).
       0.657
mreD
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
     
 0.573
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.566
fadD-2
long-chain-fatty-acid--CoA ligase (long-chain acyl-CoA synthetase) (LACS).
 
     0.412
gltB
Glutamate synthase [NADPH] large chain precursor (glutamate synthase alpha subunit) (NADPH-GOGAT) (GLTS alpha chain).
     
 0.408
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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