Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4078Unnamed protein product; Similar to putative transferase protein. (225 aa)    
Predicted Functional Partners:
plu4077
Unnamed protein product; Some similarities with unknown protein.
 
     0.905
plu4079
Unnamed protein product; Sone similarities in the N-terminal region with dehydrogenase.
      0.897
plu4081
Pyruvate carboxyltransferase domain-containing protein; Unnamed protein product; Similar in the N-terminal region with aldolase.
     
 0.780
plu4080
Unnamed protein product; Unknown protein with two candidate membrane-spanning segments.
       0.773
ISPlu4B
Transposase, IS4 family.
       0.773
plu4083
Unnamed protein product; Hypothetical gene.
     
 0.534
menA
1,4-dihydroxy-2-naphthoate octaprenyltransferase (DHNA-octaprenyltransferase); Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
    
  0.531
plu4084
Bcr/CflA family efflux transporter; Unnamed protein product; Similar to putative transport protein and multidrug resistance protein like bicyclomycin resistance protein.
       0.468
mhpB
2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase; Catalyzes the non-heme iron(II)-dependent oxidative cleavage of 2,3-dihydroxyphenylpropionic acid and 2,3-dihydroxicinnamic acid into 2-hydroxy-6-ketononadienedioate and 2-hydroxy-6- ketononatrienedioate, respectively; Belongs to the LigB/MhpB extradiol dioxygenase family.
     
 0.404
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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