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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu4085Unnamed protein product; Highly similar to unknown protein YhdT of Escherichia coli. (80 aa)    
Predicted Functional Partners:
panF
Sodium/pantothenate symporter (pantothenate permease); Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.815
plu1583
Unnamed protein product; Similar to putative sensory transduction regulator YbjN of Escherichia coli.
  
     0.665
plu2097
Unnamed protein product; Similar to unknown protein YecM of Escherichia coli.
  
     0.616
smp
Protein Smp precursor.
  
     0.604
plu1423
Unnamed protein product; Similar to unknown protein YbfA of Escherichia coli.
  
     0.581
lapA
Lipopolysaccharide assembly protein A; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.567
wzzE
Lipopolysaccharide biosynthesis protein WzzE; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.552
plu1242
UPF0255 protein plu1242; Unnamed protein product; Similar to unknown protein YafA of Escherichia coli; Belongs to the UPF0255 family.
  
     0.521
lptC
Lipopolysaccharide export system protein LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
  
     0.489
plu2865
Unnamed protein product; Similar to unknown protein yejG of Escherichia coli.
  
     0.473
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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