STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu4118Unnamed protein product; Similar to unknown protein. (143 aa)    
Predicted Functional Partners:
plu2050
PINc domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
     0.600
plu1935
N6_N4_Mtase domain-containing protein; Unnamed protein product; Weakly similar to predicted DNA methylase containing a Zn-ribbon module.
  
     0.529
plu2475
Unnamed protein product; Similar to N-terminal region of WD-repeat protein, encoded by the toxC gene of Burkholderia glumae, involved in toxoflavin biosynthesis.
  
  0.465
apaG
ApaG protein.
  
  
 0.460
plu1932
Unnamed protein product; Similar to unknown protein.
  
     0.460
plu0707
Unnamed protein product; Highly similar to unknown protein.
  
     0.448
pilR
Highly similar to PilR protein.
  
     0.442
ISPlu9K
Transposase, IS4 family.
  
     0.407
ISPlu9J
Transposase, IS4 family.
  
     0.407
ISPlu9I
Similar to N terminal part of unknown protein.
  
     0.407
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.