Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| mcf | plu3128 | plu4142 | plu3128 | Mcf protein; Some similarities with the central region of cytotoxin B and similar to unknown protein of Photorhabdus luminescens. | TcdA_TcdB_pore domain-containing protein; Unnamed protein product; Some similarities with different toxins (mcf_like protein). | 0.900 |
| mcf | plu4141 | plu4142 | plu4141 | Mcf protein; Some similarities with the central region of cytotoxin B and similar to unknown protein of Photorhabdus luminescens. | Unnamed protein product; Hypothetical protein. | 0.648 |
| mcf | recA | plu4142 | plu1249 | Mcf protein; Some similarities with the central region of cytotoxin B and similar to unknown protein of Photorhabdus luminescens. | RecA protein (Recombinase A); Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.531 |
| mcf | rpoB | plu4142 | plu0439 | Mcf protein; Some similarities with the central region of cytotoxin B and similar to unknown protein of Photorhabdus luminescens. | RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.525 |
| mcf | rpoD | plu4142 | plu3979 | Mcf protein; Some similarities with the central region of cytotoxin B and similar to unknown protein of Photorhabdus luminescens. | RNA polymerase sigma factor rpoD (Sigma-70); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.526 |
| mcf | rtxB | plu4142 | plu1333 | Mcf protein; Some similarities with the central region of cytotoxin B and similar to unknown protein of Photorhabdus luminescens. | RTX toxin ABC transporter (IM-ABC) protein RtxB. | 0.525 |
| mcf | rtxD | plu4142 | plu1332 | Mcf protein; Some similarities with the central region of cytotoxin B and similar to unknown protein of Photorhabdus luminescens. | RTX toxin ABC transporter protein (MFP) RtxD. | 0.525 |
| plu3128 | mcf | plu3128 | plu4142 | TcdA_TcdB_pore domain-containing protein; Unnamed protein product; Some similarities with different toxins (mcf_like protein). | Mcf protein; Some similarities with the central region of cytotoxin B and similar to unknown protein of Photorhabdus luminescens. | 0.900 |
| plu4141 | mcf | plu4141 | plu4142 | Unnamed protein product; Hypothetical protein. | Mcf protein; Some similarities with the central region of cytotoxin B and similar to unknown protein of Photorhabdus luminescens. | 0.648 |
| recA | mcf | plu1249 | plu4142 | RecA protein (Recombinase A); Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | Mcf protein; Some similarities with the central region of cytotoxin B and similar to unknown protein of Photorhabdus luminescens. | 0.531 |
| recA | rpoB | plu1249 | plu0439 | RecA protein (Recombinase A); Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.812 |
| recA | rpoD | plu1249 | plu3979 | RecA protein (Recombinase A); Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | RNA polymerase sigma factor rpoD (Sigma-70); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.725 |
| rpoB | mcf | plu0439 | plu4142 | RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Mcf protein; Some similarities with the central region of cytotoxin B and similar to unknown protein of Photorhabdus luminescens. | 0.525 |
| rpoB | recA | plu0439 | plu1249 | RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RecA protein (Recombinase A); Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.812 |
| rpoB | rpoD | plu0439 | plu3979 | RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase sigma factor rpoD (Sigma-70); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.980 |
| rpoD | mcf | plu3979 | plu4142 | RNA polymerase sigma factor rpoD (Sigma-70); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | Mcf protein; Some similarities with the central region of cytotoxin B and similar to unknown protein of Photorhabdus luminescens. | 0.526 |
| rpoD | recA | plu3979 | plu1249 | RNA polymerase sigma factor rpoD (Sigma-70); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | RecA protein (Recombinase A); Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.725 |
| rpoD | rpoB | plu3979 | plu0439 | RNA polymerase sigma factor rpoD (Sigma-70); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.980 |
| rtxB | mcf | plu1333 | plu4142 | RTX toxin ABC transporter (IM-ABC) protein RtxB. | Mcf protein; Some similarities with the central region of cytotoxin B and similar to unknown protein of Photorhabdus luminescens. | 0.525 |
| rtxB | rtxD | plu1333 | plu1332 | RTX toxin ABC transporter (IM-ABC) protein RtxB. | RTX toxin ABC transporter protein (MFP) RtxD. | 0.983 |
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