Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tccA1Highly similar to insecticidal toxin complex protein TccA of W14. (966 aa)    
Predicted Functional Partners:
tccB1
Highly similar to insecticidal toxin complex protein TccB of W14 Putative transmembrane protein.
   
 
 0.867
tcaC
Highly similar to insecticidal toxin complex protein TcaC of W14.
  
 
 0.660
tccB3
Insecticidal toxin complex protein TccB3.
   
 
 0.648
tcdA5
Insecticidal toxin complex protein TcdA5.
   
 
 0.648
tccC3
Insecticidal toxin complex protein TccC3.
   
 
 0.593
tccC7
Insecticidal toxin complex protein TccC7.
   
 
 0.592
tcaZ
Highly similar to insecticidal toxin complex protein TcaZ of W14.
      
 0.540
mlc
Making large colonies protein.
   
  
 0.535
plu1125
Unnamed protein product; Similar to integrase/recombinase; Belongs to the 'phage' integrase family.
      
 0.533
plu1165
Unnamed protein product; Similar to unknown protein STY4665 of Salmonella enterica subsp. enterica serovar Typhi.
      
 0.533
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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