Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4211Unnamed protein product; Highly similar to Hcp protein. (163 aa)    
Predicted Functional Partners:
plu3222
GPW_gp25 domain-containing protein; Unnamed protein product; Some similarities with hypothetical protein.
 
    0.782
plu4199
GPW_gp25 domain-containing protein; Unnamed protein product; Similar to unknown protein.
 
    0.782
plu3253
Unnamed protein product; Similar to vgrG related protein.
 
  
 0.780
plu4203
ImpA_N domain-containing protein; Unnamed protein product; Similar to unknown protein.
 
  
 0.780
plu3237
Unnamed protein product; Similar to vgrG related protein.
 
  
 0.779
plu4222
Unnamed protein product; Similar to vgrG related protein.
 
  
 0.777
plu3246
Unnamed protein product; Similar to vgrG related protein.
 
  
 0.775
plu4201
Unnamed protein product; Similar to unknown protein.
 
    0.774
plu3224
Unnamed protein product; Similar to unknown protein.
 
    0.773
plu4212
Unnamed protein product; Hypothetical gene.
       0.773
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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