STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4232Unnamed protein product; Similar to monooxygenase. (482 aa)    
Predicted Functional Partners:
plu4183
Unnamed protein product; Some similarities with the central region of cytochrome P450.
 
 
 0.765
plu1219
Unnamed protein product; Similar to Sim-nI, NovI and KikQ (cytochromes P-450), proteins involved in antibiotic biosynthesis.
 
 
 0.762
tRNA-Pro
tRNA-Pro; tRNAscan-SE vs 1.3 result - Cove score = 92.73; Belongs to the cytochrome P450 family.
 
 
 0.697
plu4259
Unnamed protein product; Similar to glutathione S-transferase; Belongs to the GST superfamily.
  
   
 0.612
plu2266
Abhydrolase_3 domain-containing protein; Unnamed protein product; Similar to lipase.
  
 0.609
plu2242
DAO domain-containing protein; Unnamed protein product; Highly similar to probable D-amino acid oxidase.
   
  
 0.535
plu4258
Unnamed protein product; Similar to 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component HpaB.
      
 0.532
plu4336
Dioxygenase; Unnamed protein product; Some similarities with dioxygenase.
  
     0.515
fabR
HTH-type transcriptional repressor FabR; Represses the transcription of fabB, involved in unsaturated fatty acid (UFA) biosynthesis. By controlling UFA production, FabR directly influences the physical properties of the membrane bilayer.
  
     0.493
plu1004
TauD domain-containing protein; Unnamed protein product; Similar to alpha-ketoglutarate-dependent taurine dioxygenase (2-aminoethanesulfonate dioxygenase).
  
     0.472
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.