Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ppxAPhotopexin A. (564 aa)    
Predicted Functional Partners:
plu2455
Unnamed protein product; Some weak similarities with calpain cysteine protease.
  
     0.565
ppxB
Photopexin B.
 
   
0.564
plu3019
Unnamed protein product; Some similarities with glycosyltransferase.
  
     0.492
plu0447
Unnamed protein product; Some similarities with unknown protein.
  
     0.484
plu3529
Asp_Arg_Hydrox domain-containing protein; Unnamed protein product; Similar to aspartyl (asparaginyl) beta hydroxylase.
  
 
   0.454
plu4590
Unnamed protein product; Similar to unknown protein.
  
     0.434
plu4144
JmjC domain-containing protein; Unnamed protein product; Some similarities with unknown eucaryotic protein.
  
     0.412
plu4241
Unnamed protein product; Highly similar to unknown gene of Photorhabdus luminescens.
       0.408
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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