Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
plu4267Peripla_BP_6 domain-containing protein; Unnamed protein product; Some similarities with ABC-type transport system branched-chain amino acid-binding protein precursor. (321 aa)    
Predicted Functional Partners:
livM
High-affinity branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.799
livH
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.773
livG
High-affinity branched-chain amino acid transport ATP-binding protein LivG.
 
  
 0.739
livF
High-affinity branched-chain amino acid transport ATP-binding protein LivF; Belongs to the ABC transporter superfamily.
 
  
 0.584
gltB
Glutamate synthase [NADPH] large chain precursor (glutamate synthase alpha subunit) (NADPH-GOGAT) (GLTS alpha chain).
     
 0.555
arcB
Aerobic respiration control sensor protein.
   
 
 0.524
bvgS
Virulence sensor protein BvgS precursor.
  
 
 0.499
plu4305
Unnamed protein product; Similar to unknown protein.
     
 0.426
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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