Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4273Unnamed protein product; Highly similar to amino acid permease. (497 aa)    
Predicted Functional Partners:
plu4272
Unnamed protein product; Similar to unknown protein.
  
    0.711
plu4286
Cupin_3 domain-containing protein; Unnamed protein product; Similar to unknown protein.
 
    0.706
hpcB
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
  
     0.690
hpcD
5-carboxymethyl-2-hydroxy-muconic acid isomerase.
  
     0.643
plu3428
Unnamed protein product; Similar to unknown protein.
  
     0.594
plu2247
Unnamed protein product; Highly similar to amino acid transporter. Putative transmembrane protein.
  
     0.587
hpcR
Homoprotocatechuate degradation operon regulator.
  
     0.525
plu3448
Unnamed protein product; Similar to unknown protein.
  
     0.484
hpaA
Regulator of the 4HPA-hydroxylase operon.
 
   
 0.471
treC
Trehalose-6-phosphate hydrolase (alpha,alpha-phosphotrehalase).
    
 0.445
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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