Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4280Unnamed protein product; Similar to Rhs-family protein. (1424 aa)    
Predicted Functional Partners:
plu4281
Unnamed protein product; Similar to unknown protein.
  
  
 0.882
plu4279
Unnamed protein product; Hypothetical gene.
       0.773
plu4278
Unnamed protein product; Similar to the N-terminal region of RhsC protein precursor.
 
    
0.634
plu3814
MFS domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
     0.633
plu3506
Unnamed protein product; Similar to ccm gene codes for both Ccm1 and Ccm2 proteins of Proteus mirabilis.
  
     0.628
plu1410
ParB domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
    0.595
plu3577
DUF637 domain-containing protein; Unnamed protein product; Some similarities with hemagglutinin/hemolysin-related proteins. Putative transmembrane protein.
 
     0.586
trxA
Thioredoxin 1 (TRX1) (TRX); Belongs to the thioredoxin family.
    
   0.581
plu3514
TPR_REGION domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
    
   0.543
plu3820
Unnamed protein product; Similar to putative thioredoxin-like protein YbbN of Escherichia coli.
    
   0.543
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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