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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu4281Unnamed protein product; Similar to unknown protein. (143 aa)    
Predicted Functional Partners:
plu4280
Unnamed protein product; Similar to Rhs-family protein.
  
 
 0.953
plu0353
Unnamed protein product; Some similarities with putative Rhs protein.
  
 
 0.806
plu3112
Unnamed protein product; Some similarities with putative RHS-family protein.
  
 
 0.806
plu3120
Unnamed protein product; Some similarities with hypothetical protein. RHS protein signature. Putative transmembrane protein.
  
 
 0.806
plu4279
Unnamed protein product; Hypothetical gene.
       0.768
plu4278
Unnamed protein product; Similar to the N-terminal region of RhsC protein precursor.
  
   0.640
hisI
phosphoribosyl-AMP cyclohydrolase (PRA-CH) / phosphoribosyl-ATP pyrophosphatase (PRA-PH); In the C-terminal section; belongs to the PRA-PH family.
   
    0.623
plu1981
Unnamed protein product; Weakly similar to putative sugar transport protein SgaT of Escherichia coli.
   
    0.616
rpmJ
50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
    0.601
hisF
Imidazole glycerol phosphate synthase subunit HisF (IGP synthase cyclase subunit); IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
   
    0.569
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.