Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4284Fido domain-containing protein; Unnamed protein product; Similar to unknown protein. (365 aa)    
Predicted Functional Partners:
plu2421
Fido domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
     0.682
plu4282
Unnamed protein product; Similar to unknown protein.
 
     0.569
plu4283
Unnamed protein product; Similar to unknown protein.
 
     0.561
plu3214
Fido domain-containing protein; Unnamed protein product; Similar to unknown protein.
 
     0.551
plu1158
Unnamed protein product; Similar to unknown protein STY4592 of Salmonella enterica subsp. enterica serovar Typhi.
 
 
   0.401
plu0252
Antitoxin; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
     0.400
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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