STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu4294HTH_35 domain-containing protein; Unnamed protein product; Similar to sugar fermentation stimulation protein B (Ner-like protein) of Escherichia coli (Pln protein of Photorhabdus luminescens). (69 aa)    
Predicted Functional Partners:
plu3442
Unnamed protein product; Similar to protein gp28 of Enterobacteria phage Mu.
  
     0.558
plu4293
HTH cro/C1-type domain-containing protein; Unnamed protein product; Some similarities with restriction enzymes control elements and transcription regulators.
       0.530
plu4295
Unnamed protein product; Similar to CcdA protein (LetA protein) (protein H) which binds to and blocks the activity of CcdB.
       0.472
plu4296
Unnamed protein product; Similarities with the N-terminal region of cytotoxic protein CcdB. Putative truncated protein.
       0.472
plu4544
HTH Mu-type domain-containing protein; Unnamed protein product; Some similarities with the N-terminal region of the repressor protein CI and with Mu transposase.
 
     0.467
plu3460
Unnamed protein product; Some similarities with bacteriophage protein Gp16.
 
     0.416
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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