Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4305Unnamed protein product; Similar to unknown protein. (537 aa)    
Predicted Functional Partners:
pxpA
5-oxoprolinase subunit A; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
 0.999
plu4306
Unnamed protein product; Similar to biotin carboxylase.
 
 0.987
plu0139
Uncharacterized protein; Truncated gene. Similar to the central region of unknown protein.
 
    0.956
plu3455
HTH iclR-type domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
    0.949
iclR
Acetate operon repressor.
  
    0.949
pcp
Pyrrolidone-carboxylate peptidase 1; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.
  
  
 0.820
plu4300
HTH gntR-type domain-containing protein; Unnamed protein product; Similar to GntR-family transcriptional regulator.
 
     0.766
plu2200
Amidase domain-containing protein; Unnamed protein product; Similar to unknown protein and to glutamyl-tRNA(Gln) amidotransferase chain A.
    
 0.760
putP
Sodium/proline symporter (Proline permease); Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
     
 0.640
pcp2
Pyrrolidone-carboxylate peptidase 2; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.
  
  
 0.630
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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