Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4312Unnamed protein product; Similar to unknown protein. (220 aa)    
Predicted Functional Partners:
plu4311
Unnamed protein product; Similar to unknown protein.
 
     0.959
plu4310
Unnamed protein product; Some similarities with unknown protein.
 
    0.947
plu4314
Unnamed protein product; Some similarities with unknown protein.
 
     0.934
plu4313
Unnamed protein product; Similar to unknown protein.
 
     0.933
plu4309
GSP_synth domain-containing protein; Unnamed protein product; Similar to unknown protein.
 
     0.854
plu3956
UPF0441 protein plu3956; Unnamed protein product; Highly similar to unknown protein YgiB of Escherichia coli; Belongs to the UPF0441 family.
 
    0.738
plu3957
GSP_synth domain-containing protein; Unnamed protein product; Highly similar to putative synthetase/amidase YgiC of Escherichia coli.
 
     0.721
pspB
Phage shock protein B.
  
     0.569
nudB
dATP pyrophosphohydrolase.
  
     0.553
plu3092
5'-deoxynucleotidase plu3092; Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates.
  
     0.438
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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