Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
hsdMType I site-specific deoxyribonuclease HsdM; Truncated gene. Similar to the central region of integrase. (518 aa)    
Predicted Functional Partners:
hsdS
Type I restriction enzyme specificity protein HsdS.
 
 0.994
hsdR
Type I site-specific deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.970
prrC
Anticodon nuclease PrrC.
 
     0.834
plu0137
Unnamed protein product; Highly similar to unknown protein.
 
    0.821
cspE
Cold shock-like protein.
      
 0.586
cspD
Cold shock protein.
      
 0.586
plu1842
CSD_1 domain-containing protein; Unnamed protein product; Similar to cold shock protein CspC of Escherichia coli.
      
 0.586
cspI
Cold shock-like protein (CPS-I).
      
 0.586
proC
Pyrroline-5-carboxylate reductase (P5CR) (P5C reductase); Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
      
 0.567
rpiA
Ribose 5-phosphate isomerase A (phosphoriboisomerase A); Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
      
 0.546
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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