Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hsdRType I site-specific deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1038 aa)    
Predicted Functional Partners:
hsdM
Type I site-specific deoxyribonuclease HsdM; Truncated gene. Similar to the central region of integrase.
 
  
 0.970
hsdS
Type I restriction enzyme specificity protein HsdS.
 
  
 0.958
prrC
Anticodon nuclease PrrC.
 
     0.835
plu0137
Unnamed protein product; Highly similar to unknown protein.
 
    0.816
plu1158
Unnamed protein product; Similar to unknown protein STY4592 of Salmonella enterica subsp. enterica serovar Typhi.
  
  
 0.724
plu0233
N6_Mtase domain-containing protein; Unnamed protein product; Similar to unknown protein and some weak similarities with deoxyribonuclease/methylase.
  
  
 0.628
plu1163
N6_Mtase domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
  
  
 0.628
fliZ
FliZ protein.
      
 0.620
recA
RecA protein (Recombinase A); Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
      
 0.568
lrp
Leucine-responsive regulatory protein.
      
 0.539
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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