Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4325HNHc domain-containing protein; Unnamed protein product; Similar to unknown protein. (290 aa)    
Predicted Functional Partners:
plu3030
Unnamed protein product; Similar to unknown bacteriophage protein.
  
     0.535
plu2905
Unnamed protein product; Similar to bacteriophage lambda endopeptidase.
  
     0.531
plu3747
Unnamed protein product; Similar to probable endopeptidase gp15 protein of lamdoid prophage.
  
     0.527
plu4899
Sulfatase domain-containing protein; Unnamed protein product; Similar to putative membrane protein.
  
     0.516
plu3029
Gp138_N domain-containing protein; Unnamed protein product; Similar to unknown bacteriophage protein.
  
     0.488
plu0817
Unnamed protein product; Weakly similar to unknown protein.
  
     0.477
plu3027
Baseplate_J domain-containing protein; Unnamed protein product; Similar to unknown bacteriophage protein.
  
     0.466
plu2907
Unnamed protein product; Similar to bacteriophage protein.
  
     0.463
plu3748
Unnamed protein product; Some similarities with phage structural protein P5.
  
     0.462
plu2876
Baseplate_J domain-containing protein; Unnamed protein product; Similar to putative bacteriophage protein.
  
     0.461
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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