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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tyrBAromatic-amino-acid aminotransferase (AROAT) (ARAT). (399 aa)    
Predicted Functional Partners:
tyrA
T-protein [includes: chorismate mutase (CM); prephenate dehydrogenase (PDH)].
    
 0.945
pheA
P-protein [includes: chorismate mutase (CM); prephenate dehydratase (PDT)].
    
 0.945
plu1443
Aminotran_1_2 domain-containing protein; Unnamed protein product; Similar to histidinol-phosphate aminotransferase.
   
 
 0.913
dadA
D-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids; Belongs to the DadA oxidoreductase family.
  
  
 0.912
plu0570
Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate.
    
 0.906
aspC
Aspartate aminotransferase (transaminase A).
  
  
 
0.906
plu2684
GAF domain-containing protein; Unnamed protein product; Similar to probable membrane protein YebR of Escherichia coli.
    
  0.904
metK
S-adenosylmethionine synthetase (methionine adenosyltransferase) (AdoMet synthetase) (MAT); Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
     
 0.904
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
     
 0.904
plu4269
Unnamed protein product; Similar to amino acid decarboxylase.
     
 0.903
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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