Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tyrBAromatic-amino-acid aminotransferase (AROAT) (ARAT). (399 aa)    
Predicted Functional Partners:
pheA
P-protein [includes: chorismate mutase (CM); prephenate dehydratase (PDT)].
    
 0.937
tyrA
T-protein [includes: chorismate mutase (CM); prephenate dehydrogenase (PDH)].
    
 0.936
plu1443
Aminotran_1_2 domain-containing protein; Unnamed protein product; Similar to histidinol-phosphate aminotransferase.
   
 
 0.924
dadA
D-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids; Belongs to the DadA oxidoreductase family.
  
  
  0.911
metK
S-adenosylmethionine synthetase (methionine adenosyltransferase) (AdoMet synthetase) (MAT); Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
     
 0.908
plu2234
Unnamed protein product; Similar to histidine ammonia-lyase.
   
 
 0.907
plu0570
Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate.
    
 0.906
aspC
Aspartate aminotransferase (transaminase A).
  
  
 
0.906
plu2684
GAF domain-containing protein; Unnamed protein product; Similar to probable membrane protein YebR of Escherichia coli.
    
  0.904
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
     
 0.902
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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