Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
plu4388Unnamed protein product; Unknown protein. (298 aa)    
Predicted Functional Partners:
nrdI
NrdI protein; Probably involved in ribonucleotide reductase function.
  
 
 0.794
nrdE
Ribonucleoside-diphosphate reductase alpha-chain (ribonucleotide reductase R1 subunit); Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
 
 0.769
nrdA
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
 
 0.769
plu4389
Unnamed protein product; Similar to unknown protein.
     
 0.673
plu4390
Hydrolase_4 domain-containing protein; Unnamed protein product; Similar to unknown protein.
       0.668
plu4387
Unnamed protein product; Some similarities with isobutylamine N-hydroxylase and putative oxidoreductase.
       0.659
plu4385
DUF2156 domain-containing protein; Unnamed protein product; Similar to unknown protein.
     
 0.480
plu4386
Unnamed protein product; Some similarities with aminotransferase.
       0.465
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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