Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| acrR | crp | plu3850 | plu0395 | acrAB operon repressor. | Catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein). | 0.529 |
| acrR | fis | plu3850 | plu4089 | acrAB operon repressor. | DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | 0.526 |
| acrR | gntR | plu3850 | plu0496 | acrAB operon repressor. | Repressor of gluconate (gnt) operon. | 0.526 |
| acrR | iclR | plu3850 | plu4392 | acrAB operon repressor. | Acetate operon repressor. | 0.537 |
| crp | acrR | plu0395 | plu3850 | Catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein). | acrAB operon repressor. | 0.529 |
| crp | fis | plu0395 | plu4089 | Catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein). | DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | 0.663 |
| crp | glnG | plu0395 | plu0235 | Catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein). | Nitrogen regulation protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.557 |
| crp | gntR | plu0395 | plu0496 | Catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein). | Repressor of gluconate (gnt) operon. | 0.601 |
| crp | iclR | plu0395 | plu4392 | Catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein). | Acetate operon repressor. | 0.543 |
| crp | ompR | plu0395 | plu0212 | Catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein). | Two-component response regulator. | 0.572 |
| fis | acrR | plu4089 | plu3850 | DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | acrAB operon repressor. | 0.526 |
| fis | crp | plu4089 | plu0395 | DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | Catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein). | 0.663 |
| fis | glnG | plu4089 | plu0235 | DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | Nitrogen regulation protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.563 |
| fis | gntR | plu4089 | plu0496 | DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | Repressor of gluconate (gnt) operon. | 0.526 |
| fis | iclR | plu4089 | plu4392 | DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | Acetate operon repressor. | 0.579 |
| fis | ompR | plu4089 | plu0212 | DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | Two-component response regulator. | 0.531 |
| glnG | crp | plu0235 | plu0395 | Nitrogen regulation protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | Catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein). | 0.557 |
| glnG | fis | plu0235 | plu4089 | Nitrogen regulation protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | DNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | 0.563 |
| glnG | gntR | plu0235 | plu0496 | Nitrogen regulation protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | Repressor of gluconate (gnt) operon. | 0.530 |
| glnG | iclR | plu0235 | plu4392 | Nitrogen regulation protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | Acetate operon repressor. | 0.532 |
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