Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ampHPenicillin-binding protein AmpH. (405 aa)    
Predicted Functional Partners:
plu1818
Unnamed protein product; Similar to unknown protein YceP of Escherichia coli.
  
     0.693
plu2232
UPF0482 protein plu2232; Unnamed protein product; Similar to unknown protein YnfB precursor of Escherichia coli; Belongs to the UPF0482 family.
  
     0.690
plu2677
Unnamed protein product; Similar to probable membrane protein YniB of Escherichia coli.
  
     0.672
yabN
Putative periplasmic binding protein of transport system YabN; Activates the small RNA gene sgrS under glucose-phosphate stress conditions as well as yfdZ. Represses its own transcription under both stress and non-stress conditions. Might act as a sensor of the intracellular accumulation of phosphoglucose by binding these molecules in its C-terminal solute-binding domain.
  
     0.645
hha
Haemolysin expression modulating protein.
  
     0.626
plu4106
Unnamed protein product; Similar to unknown protein YhhL of Escherichia coli.
  
     0.619
plu2057
Unnamed protein product; Some similarities with putative adhesin, invasin and intimin.
  
     0.601
holE
DNA polymerase III, theta subunit.
  
     0.573
plu0288
Unnamed protein product; Similar to unknown protein YidR of Escherichia coli.
  
     0.557
plu0306
Unnamed protein product; Similar to unknown protein YhjJ precursor of Escherichia coli.
  
    0.541
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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