Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4510AMP-binding domain-containing protein; Unnamed protein product; Similar to AMP-ligase. (528 aa)    
Predicted Functional Partners:
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
  
 0.919
plu1880
Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
  
 0.783
plu2408
AMP-binding domain-containing protein; Unnamed protein product; Some similarities with D-alanine-D-alanyl carrier protein ligase.
  
     0.709
plu0756
AMP-binding domain-containing protein; Unnamed protein product; Similar to enterobactin synthetase component F-related protein and other antibiotics synthetases.
  
     0.697
plu3135
Unnamed protein product; Similar to AMP-binding protein.
  
     0.598
plu3921
Uncharacterized protein; Truncated gene. Some similarities with polyketide synthase type I.
 
 0.567
menE
O-succinylbenzoic acid--CoA ligase (OSB-CoA synthetase) (O-succinylbenzoate-CoA synthase).
  
     0.558
plu1878
Carrier domain-containing protein; Unnamed protein product; Similar to antibiotic synthetase.
 
 
0.549
plu1212
Carrier domain-containing protein; Unnamed protein product; Some similarities with polyketide synthase PksC and mycosubtilin synthetase chain MycA. Putative transmembrane protein.
 
 0.534
plu2642
Carrier domain-containing protein; Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
 
 
0.530
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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