Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4515Unnamed protein product; Similar to permease protein of ABC transport system. (381 aa)    
Predicted Functional Partners:
plu4516
Unnamed protein product; Highly similar to membrane fusion protein (MFP) of ABC transport system.
 
  
 0.955
plu4514
Unnamed protein product; Similar to permease protein of ABC transport system.
 
    
0.845
plu0817
Unnamed protein product; Weakly similar to unknown protein.
  
     0.663
walV
WalW protein.
  
     0.592
plu2916
Prim_Zn_Ribbon domain-containing protein; Unnamed protein product; Some similarities with alpha replication protein of prophage.
  
     0.591
ybhF
ABC transporter ATP-binding protein YbhF.
 
  
 0.574
plu3926
Unnamed protein product; Some similarities with ribonuclease; Belongs to the RNase T2 family.
  
     0.536
plu1894
HNHc domain-containing protein; Unnamed protein product; Similar to pyocin S2 and S1.
  
     0.528
plu2552
Unnamed protein product; Similar to putative nitroreductase YdjA of Escherichia coli.
  
  
 0.526
plu0802
HTH tetR-type domain-containing protein; Unnamed protein product; Similar to putative TetR-family regulatory protein.
 
     0.516
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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