Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4516Unnamed protein product; Highly similar to membrane fusion protein (MFP) of ABC transport system. (323 aa)    
Predicted Functional Partners:
plu4515
Unnamed protein product; Similar to permease protein of ABC transport system.
 
  
 0.955
plu4514
Unnamed protein product; Similar to permease protein of ABC transport system.
 
  
 0.954
ybhF
ABC transporter ATP-binding protein YbhF.
 
  
 0.707
ybhS
ABC transporter permease protein YbhS.
 
  
 0.642
ybhR
ABC transporter permease protein YbhR.
 
  
 0.619
plu2734
HlyD_D23 domain-containing protein; Unnamed protein product; Membrane fusion protein (MPF) component of efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.544
macB
Macrolide-specific ABC-type efflux carrier protein MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.540
plu2645
Unnamed protein product; Similar to Membrane Fusion Protein (MFP) of ABC transport system.
  
     0.506
plu2736
Unnamed protein product; Similar to ABC transporter (permease subunit).
 
  
 0.500
plu2647
Unnamed protein product; Highly similar to permease of ABC transporter.
 
  
 0.471
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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