STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu4546HTH_35 domain-containing protein; Unnamed protein product; Similar to sugar fermentation stimulation protein B (Ner-like protein) of Escherichia coli (Pln protein of Photorhabdus luminescens). (88 aa)    
Predicted Functional Partners:
plu4544
HTH Mu-type domain-containing protein; Unnamed protein product; Some similarities with the N-terminal region of the repressor protein CI and with Mu transposase.
 
     0.757
plu3442
Unnamed protein product; Similar to protein gp28 of Enterobacteria phage Mu.
  
     0.526
plu2166
Unnamed protein product; Similar to unknown protein YdgH precursor of Escherichia coli.
  
     0.512
plu4545
HTH Mu-type domain-containing protein; Unnamed protein product; Some similarities with repressor protein CI.
       0.502
mprA
Transcriptional repressor mprA (EmrR protein).
  
     0.428
pagP
Lipid A palmitoyltransferase PagP; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.
  
     0.412
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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