STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4558Unnamed protein product; Similar to unknown protein YtfJ precursor of Escherichia coli. (184 aa)    
Predicted Functional Partners:
plu4557
Unnamed protein product; Highly similar to unknown protein YtfK of Escherichia coli.
 
     0.857
uspB
Universal stress protein B.
  
     0.678
viaA
Unnamed protein product; Similar to unknown protein YieM of Escherichia coli.
  
     0.632
plu2686
Unnamed protein product; Similar to unknown protein YebY precursor of Escherichia coli.
  
     0.621
zapC
Cell division protein ZapC; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.
  
     0.589
tus
DNA replication terminus site-binding protein (Ter protein) (Ter binding protein).
  
     0.580
seqA
SeqA protein, negative modulator of initiation of replication; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
  
     0.510
plu3186
Unnamed protein product; Highly similar to unknown protein YfcL of Escherichia coli.
  
     0.505
plu3844
Unnamed protein product; Similar to unknown protein YbaM of Escherichia coli.
  
     0.490
gsk
Inosine-guanosine kinase.
  
     0.484
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.