Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
plu4562HTH luxR-type domain-containing protein; Unnamed protein product; Similar to transcription regulator. (238 aa)    
Predicted Functional Partners:
plu3221
HTH luxR-type domain-containing protein; Unnamed protein product; Similar to probable transcription regulator, LuxR family.
    
 
 0.564
plu3720
HTH luxR-type domain-containing protein; Unnamed protein product; Similar to transcriptional regulator LuxR family.
    
 
 0.564
plu0925
HTH luxR-type domain-containing protein; Unnamed protein product; Weakly similar to transcriptional regulator, LuxR family.
      
 0.540
plu2018
HTH luxR-type domain-containing protein; Truncated gene. Some similarities with killer protein of pyocin S3-like of Photorhabdus luminescens.
      
 0.540
plu3729
PAS_4 domain-containing protein; Unnamed protein product; Some similarities with transcription regulator LuxR family.
      
 0.540
plu3735
PAS_4 domain-containing protein; Unnamed protein product; Some similarities with LuxR family transcriptional regulator.
      
 0.540
plu0919
HTH luxR-type domain-containing protein; Unnamed protein product; Weakly similar to transcriptional regulator, LuxR family.
      
 0.539
plu0320
HTH luxR-type domain-containing protein; Unnamed protein product; Similar to probable transcription regulator SdiA of Escherichia coli.
  
 
 
0.465
fklB
FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase (PPiase) (Rotamase) (FKBP22).
       0.464
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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