Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
plu4566Unnamed protein product; Some similarities with unknown protein. (267 aa)    
Predicted Functional Partners:
argI
Ornithine carbamoyltransferase chain I (OTCase-1); Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
    
 0.909
speA
Biosynthetic arginine decarboxylase (ADC); Catalyzes the biosynthesis of agmatine from arginine.
     
 0.905
adiA
Biodegradative arginine decarboxylase.
     
 0.902
plu0158
Unnamed protein product; Similar to L-arginine:lysine amidinotransferase and similar to L-arginine:glycine amidinotransferase.
     
  0.900
ureA
Urease gamma subunit; Belongs to the urease gamma subunit family.
     
  0.900
ureB
Urease beta subunit; Belongs to the urease beta subunit family.
     
  0.900
ureC
Urease alpha subunit; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
     
  0.900
astA
Arginine N-succinyltransferase (AOST); Catalyzes the transfer of succinyl-CoA to arginine to produce N(2)-succinylarginine.
    
  0.900
argE
Acetylornithine deacetylase (acetylornithinase) (AO) (N-acetylornithinase) (NAO); Belongs to the peptidase M20A family. ArgE subfamily.
     
  0.900
plu4568
PALP domain-containing protein; Unnamed protein product; Similar to cystathionine beta-synthase (cysteine synthase).
     
 0.807
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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