Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
plu4589HTH lysR-type domain-containing protein; Unnamed protein product; Some similarities with transcription regulator LysR family homologs; Belongs to the LysR transcriptional regulatory family. (305 aa)    
Predicted Functional Partners:
plu0410
HTH lysR-type domain-containing protein; Unnamed protein product; Weakly similar to putative LysR-family trancsriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.762
plu3936
HTH lysR-type domain-containing protein; Unnamed protein product; Similar to LysR-family transcription regulators; Belongs to the LysR transcriptional regulatory family.
  
     0.757
lrhA
LrhA (HexA) may be a general repressor of primary-specific phenotype. lrhA expression is increased (at least 10-fold) in the secondary variant of K122, UK210 and TT01; Belongs to the LysR transcriptional regulatory family.
  
     0.712
plu1189
HTH lysR-type domain-containing protein; Unnamed protein product; Similar to transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.700
plu4260
HTH lysR-type domain-containing protein; Unnamed protein product; Similar to transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.594
plu4590
Unnamed protein product; Similar to unknown protein.
       0.535
plu4591
Unnamed protein product; Similar to unknown protein. Putative transmembrane protein.
  
    0.505
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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