Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4628Unnamed protein product; Similar to L-2,4-diaminobutyrate decarboxylase. (514 aa)    
Predicted Functional Partners:
plu4629
Unnamed protein product; Similar to alcaligin synthesis protein AlcA and to putative monooxigenase.
 
   
 0.935
plu4263
Unnamed protein product; Similar to diaminobutyrate--pyruvate aminotransferase (L-diaminobutyric acid transaminase) (diaminobutyrate transaminase) (DABA aminotransferase) (DABA-AT); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 0.934
plu2191
Uncharacterized protein; Truncated gene. Some similarities with N-terminal region of 2-hydroxypenta-2,4-dienoate hydratase.
  
 0.926
plu3538
Diaminobutyrate--2-oxoglutarate transaminase; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 0.919
plu4630
AlcB domain-containing protein; Unnamed protein product; Similar to rhizobactin and aerobactin siderophores biosynthesis proteins RhsF and LucC.
 
  
 0.833
plu4621
Unnamed protein product; Similar to alcaligin synthesis protein AlcC and rhizobactin siderophore biosynthesis protein RhsF.
 
  
 0.799
plu4268
Unnamed protein product; Similar to L-ornithine 5-monooxygenase (L-ornithine N5-oxygenase).
 
   
 0.733
plu4262
Unnamed protein product; Similar to L-ornithine 5-monooxygenase (L-ornithine N5-oxygenase).
 
   
 0.679
fhuF
Ferric iron reductase protein FhuF.
     
 0.420
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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