Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xerCIntegrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerD binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerC specifically exchanges the t [...] (303 aa)    
Predicted Functional Partners:
plu4639
Unnamed protein product; Highly similar to unknown protein YigA of Escherichia coli.
  
    0.925
dapF
Diaminopimelate epimerase (DAP epimerase); Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
  
  
 0.901
plu4637
Unnamed protein product; Similar to unknown protein YigB of Escherichia coli.
  
    0.849
plu4792
Phage_integrase domain-containing protein; Unnamed protein product; Highly similar to the C-terminal region of Int protein.
  
 
 
 0.718
uvrD
DNA helicase II.
  
  
 0.672
ftsK
Cell division protein.
  
   
 0.670
plu4641
Unnamed protein product; Similar to unknown protein YifL of Escherichia coli.
     
 0.657
plu4790
Phage_integrase domain-containing protein; Unnamed protein product; Similar to bacteriophage integrase.
  
 
 
 0.599
plu1166
Unnamed protein product; Similar to XerC integrase; Belongs to the 'phage' integrase family.
  
 
   0.588
cyaY
CyaY protein, which belongs to the frataxin family; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis.
       0.583
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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