Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4671Unnamed protein product; Similar to potassium uptake TrkA protein. (361 aa)    
Predicted Functional Partners:
plu1231
CN hydrolase domain-containing protein; Unnamed protein product; Highly similar to nitrilase. Putative secreted protein.
 
    0.718
plu1232
Unnamed protein product; Highly similar to unknown protein.
 
     0.703
plu1227
Unnamed protein product; Similar to unknown protein.
 
     0.701
plu1229
N-acetyltransferase domain-containing protein; Unnamed protein product; Similar to unknown protein.
 
     0.700
plu1230
Elp3 domain-containing protein; Unnamed protein product; Highly similar to unknown protein.
 
     0.692
plu1228
Unnamed protein product; Similar to unknown protein. Putative transmembrane protein.
 
     0.690
plu0935
Unnamed protein product; Weakly similar to unknown protein.
 
     0.669
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
  
 
 0.446
plu1880
Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
  
 
 0.400
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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