STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu4686MCM domain-containing protein; Unnamed protein product; Highly similar to unknown protein YifB of Escherichia coli (putative magnesium chelatase family protein). (507 aa)    
Predicted Functional Partners:
plu0199
Pribosyltran domain-containing protein; Unnamed protein product; Similar to unknown protein YhgH of Escherichia coli.
 
  
 0.879
smf
Smf protein.
 
 
 0.819
plu3864
Unnamed protein product; Similar to unknown protein YbaV of Escherichia coli.
  
  
 0.596
plu1629
Lactamase_B domain-containing protein; Unnamed protein product; Similar to probable membrane protein YcaI of Escherichia coli.
 
  
 0.516
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
  
   
 0.512
plu4003
UPF0102 protein plu4003; Unnamed protein product; Similar to unknown protein YraN of Escherichia coli; Belongs to the UPF0102 family.
 
  
 0.509
plu4452
Unnamed protein product; Similar to ATP-dependent DNA helicase.
  
  
 0.456
plu0091
Secretin_N domain-containing protein; Unnamed protein product; Some similarities with protein transport protein HofQ precursor of Escherichia coli.
      
 0.434
plu4453
Unnamed protein product; Similar to a putative DNA processing protein.
  
 
 0.402
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.