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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bfdBacterioferritin-associated ferredoxin. (64 aa)    
Predicted Functional Partners:
bfr
Bacterioferritin (BFR) (cytochrome B-1) (cytochrome B-557); Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
 
 
 0.919
plu4310
Unnamed protein product; Some similarities with unknown protein.
  
     0.548
flgM
Negative regulator of flagellin synthesis (Anti-sigma-28 factor) FlgM.
  
    0.539
plu3956
UPF0441 protein plu3956; Unnamed protein product; Highly similar to unknown protein YgiB of Escherichia coli; Belongs to the UPF0441 family.
  
     0.535
plu0243
N-acetyltransferase domain-containing protein; Unnamed protein product; Highly similar to putative acetyltransferase YiiD of Escherichia coli.
  
     0.524
plu2556
Unnamed protein product; Highly similar to unknown protein YeaC of Escherichia coli.
  
     0.496
xylR
Xylose operon regulatory protein.
  
    0.482
plu4140
Unnamed protein product; Similar to putative TetR-family regulatory protein YjdC of Escherichia coli.
  
     0.481
fhuF
Ferric iron reductase protein FhuF.
  
  
 0.481
plu2865
Unnamed protein product; Similar to unknown protein yejG of Escherichia coli.
  
     0.462
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.