Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4737Unnamed protein product; Similar to unknown protein YijD of Escherichia coli. (123 aa)    
Predicted Functional Partners:
fabR
HTH-type transcriptional repressor FabR; Represses the transcription of fabB, involved in unsaturated fatty acid (UFA) biosynthesis. By controlling UFA production, FabR directly influences the physical properties of the membrane bilayer.
  
    0.858
plu1242
UPF0255 protein plu1242; Unnamed protein product; Similar to unknown protein YafA of Escherichia coli; Belongs to the UPF0255 family.
  
     0.772
plu1423
Unnamed protein product; Similar to unknown protein YbfA of Escherichia coli.
  
     0.761
plu4557
Unnamed protein product; Highly similar to unknown protein YtfK of Escherichia coli.
  
     0.757
plu1173
Unnamed protein product; Highly similar to unknown protein YggN of Escherichia coli.
  
     0.755
plu0844
Unnamed protein product; Similar to unknown protein YacC of Escherichia coli.
  
     0.751
plu0699
UPF0294 protein plu0699; Unnamed protein product; Similar to unknown protein YafD of Escherichia coli.
  
     0.745
plu2097
Unnamed protein product; Similar to unknown protein YecM of Escherichia coli.
  
     0.744
plu3616
UPF0231 protein plu3616; Unnamed protein product; Similar to unknown protein YacL of Escherichia coli; Belongs to the UPF0231 family.
  
     0.740
plu2677
Unnamed protein product; Similar to probable membrane protein YniB of Escherichia coli.
  
     0.736
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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