Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu4770Unnamed protein product; Similar to putative membrane protein YiiR of Escherichia coli. (144 aa)    
Predicted Functional Partners:
flgM
Negative regulator of flagellin synthesis (Anti-sigma-28 factor) FlgM.
  
     0.758
plu3312
Unnamed protein product; Similar to putative alpha helix protein YfhG of Escherichia coli.
  
     0.750
plu4771
Unnamed protein product; Similar to unknown protein YiiQ precursor of Escherichia coli.
 
     0.748
plu1423
Unnamed protein product; Similar to unknown protein YbfA of Escherichia coli.
  
     0.737
plu2865
Unnamed protein product; Similar to unknown protein yejG of Escherichia coli.
  
     0.735
wzzE
Lipopolysaccharide biosynthesis protein WzzE; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.730
plu2700
Unnamed protein product; Similar to probable membrane protein YobD of Escherichia coli.
  
     0.726
fepE
Ferric enterobactin transport protein.
  
     0.719
plu2677
Unnamed protein product; Similar to probable membrane protein YniB of Escherichia coli.
  
     0.710
panZ
PanD regulatory factor; Controls both the activation and catalytic activity of PanD in a coenzyme A (CoA)-dependent fashion; Belongs to the PanZ/PanM family.
 
     0.710
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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