STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu4785Toxin; Unnamed protein product; Similar to unknown protein; Belongs to the RelE toxin family. (100 aa)    
Predicted Functional Partners:
plu4784
Unnamed protein product; Highly similar to unknown protein.
 
   0.952
plu2250
Unnamed protein product; Highly similar to unknown protein.
 
   0.789
plu4283
Unnamed protein product; Similar to unknown protein.
 
   0.784
plu0723
Unnamed protein product; Some similarities with unknown protein.
  
     0.539
plu0724
Unnamed protein product; Some similarities with unknown protein.
  
     0.498
plu0251
Unnamed protein product; Some similarities with unknown protein.
  
     0.487
plu2305
RHH_1 domain-containing protein; Truncated gene. Some similarities with plasmid stability-like protein.
 
   0.464
plu1152
Unnamed protein product; Similar to putative integrase; Belongs to the 'phage' integrase family.
  
     0.459
ccdA
CcdA protein.
  
     0.435
plu0136
DUF4942 domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
     0.406
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.